TAP PHD in Phyllostachys heterocycla

Full lineage¹: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Protein source: BambooGDB


The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules

PHD
Alfin-like
Homeobox
zf-TAZ
ARID
zf-MIZ
zf-CCCH
HMG_box
DDT
Myb_DNA-binding
JmjC
JmjN
SWIB

(Domain names are clickable)



List of proteins (38)

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namename additionClick button to show/hide sequence: Download sequence?
PH01000006G3240PH_genemodel_v1 PH01000006..2249921..2258325 . - . ID=PH01000006G3240;Name=protein binding protein, putative, expressed
PH01000062G1960PH_genemodel_v1 PH01000062..1330001..1335655 . + . ID=PH01000062G1960;Name=PHD-finger family protein, expressed
PH01000181G0130PH_genemodel_v1 PH01000181..79129..90370 . + . ID=PH01000181G0130;Name=TOPBP1C - Similar to DNA replication protein TOPBP1 from, expressed
PH01000288G0860PH_genemodel_v1 PH01000288..598566..607743 . - . ID=PH01000288G0860;Name=PHD-finger domain containing protein, expressed
PH01000317G1120PH_genemodel_v1 PH01000317..744518..748690 . - . ID=PH01000317G1120;Name=PHD-finger domain containing protein, putative, expressed
PH01000347G1220PH_genemodel_v1 PH01000347..699330..701695 . - . ID=PH01000347G1220;Name=ATXR, putative
PH01000367G1100PH_genemodel_v1 PH01000367..743568..749766 . + . ID=PH01000367G1100;Name=PHD-finger domain containing protein, putative, expressed
PH01000475G0360PH_genemodel_v1 PH01000475..254676..261457 . + . ID=PH01000475G0360;Name=BAH domain containing protein, expressed
PH01000553G0500PH_genemodel_v1 PH01000553..399308..417160 . - . ID=PH01000553G0500;Name=CHR4/MI-2-LIKE, putative, expressed
PH01000648G0540PH_genemodel_v1 PH01000648..370999..381907 . + . ID=PH01000648G0540;Name=PHD finger family protein, putative, expressed
PH01000797G0460PH_genemodel_v1 PH01000797..277225..281744 . + . ID=PH01000797G0460;Name=PHD-finger domain containing protein, putative, expressed
PH01000824G0570PH_genemodel_v1 PH01000824..412506..421539 . - . ID=PH01000824G0570;Name=BAH domain containing protein, expressed
PH01000826G0530PH_genemodel_v1 PH01000826..328584..334478 . - . ID=PH01000826G0530;Name=PHD-finger domain containing protein, expressed
PH01000845G0700PH_genemodel_v1 PH01000845..472109..482043 . - . ID=PH01000845G0700;Name=PHD finger family protein, putative, expressed
PH01000881G0100PH_genemodel_v1 PH01000881..74200..82301 . - . ID=PH01000881G0100;Name=expressed_protein
PH01000890G0190PH_genemodel_v1 PH01000890..101675..110500 . - . ID=PH01000890G0190;Name=PHD-finger domain containing protein, putative, expressed
PH01000981G0170PH_genemodel_v1 PH01000981..123126..127184 . - . ID=PH01000981G0170;Name=PHD-finger domain containing protein, putative, expressed
PH01000982G0600PH_genemodel_v1 PH01000982..424502..433408 . + . ID=PH01000982G0600;Name=CHR4/MI-2-LIKE, putative, expressed
PH01001382G0320PH_genemodel_v1 PH01001382..181005..185477 . + . ID=PH01001382G0320;Name=PHD-finger family protein, expressed
PH01001808G0030PH_genemodel_v1 PH01001808..10955..16503 . + . ID=PH01001808G0030;Name=PHD finger family protein, putative, expressed
PH01001808G0170PH_genemodel_v1 PH01001808..115266..120152 . + . ID=PH01001808G0170;Name=PHD-finger domain containing protein, putative, expressed
PH01001983G0050PH_genemodel_v1 PH01001983..38610..46438 . + . ID=PH01001983G0050;Name=PHD-finger family protein, expressed
PH01002082G0230PH_genemodel_v1 PH01002082..112865..119957 . + . ID=PH01002082G0230;Name=PHD-finger family protein, expressed
PH01002093G0350PH_genemodel_v1 PH01002093..233086..245705 . - . ID=PH01002093G0350;Name=SET domain containing protein, expressed
PH01002436G0170PH_genemodel_v1 PH01002436..124848..127237 . + . ID=PH01002436G0170;Name=PHD-finger domain containing protein, putative, expressed
PH01002905G0010PH_genemodel_v1 PH01002905..5773..9674 . + . ID=PH01002905G0010;Name=PHD-finger domain containing protein, putative, expressed
PH01002905G0260PH_genemodel_v1 PH01002905..169035..177504 . + . ID=PH01002905G0260;Name=PHD finger family protein, putative, expressed
PH01002971G0120PH_genemodel_v1 PH01002971..100215..104926 . + . ID=PH01002971G0120;Name=PHD-finger domain containing protein, putative, expressed
PH01002984G0160PH_genemodel_v1 PH01002984..144392..147347 . + . ID=PH01002984G0160;Name=PHD-finger domain containing protein, putative, expressed
PH01003181G0020PH_genemodel_v1 PH01003181..13236..25974 . + . ID=PH01003181G0020;Name=ORC1 - Putative origin recognition complex subunit 1, expressed
PH01003638G0120PH_genemodel_v1 PH01003638..82000..85714 . - . ID=PH01003638G0120;Name=PHD-finger domain containing protein, putative, expressed
PH01003730G0100PH_genemodel_v1 PH01003730..70428..75625 . + . ID=PH01003730G0100;Name=PHD-finger family protein, expressed
PH01004745G0050PH_genemodel_v1 PH01004745..28686..31355 . + . ID=PH01004745G0050;Name=PHD-finger domain containing protein, putative, expressed
PH01004811G0070PH_genemodel_v1 PH01004811..55678..65016 . - . ID=PH01004811G0070;Name=PHD-finger domain containing protein, putative, expressed
PH01005072G0040PH_genemodel_v1 PH01005072..24513..41202 . + . ID=PH01005072G0040;Name=expressed_protein
PH01005326G0050PH_genemodel_v1 PH01005326..10601..16648 . + . ID=PH01005326G0050;Name=PHD-finger family protein, expressed
PH01005326G0080PH_genemodel_v1 PH01005326..26562..35439 . + . ID=PH01005326G0080;Name=TOPBP1B - Similar to DNA replication protein TOPBP1 from, expressed
PH01005771G0070PH_genemodel_v1 PH01005771..49126..52610 . - . ID=PH01005771G0070;Name=PHD-finger domain containing protein, putative, expressed
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A list of species letter codes included in the protein names can be found here (opens in new tab).

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¹ Information recieved using NCBI E-utilities and NCBI taxonomy database.
Impressum